Protein Info for BT2807 in Bacteroides thetaiotaomicron VPI-5482

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF16339: DUF4969" amino acids 1 to 70 (70 residues), 117.8 bits, see alignment E=4.4e-38 PF02449: Glyco_hydro_42" amino acids 78 to 224 (147 residues), 28.5 bits, see alignment E=2.1e-10 PF01301: Glyco_hydro_35" amino acids 78 to 127 (50 residues), 30.1 bits, see alignment 7.9e-11 PF16349: DUF4978" amino acids 253 to 431 (179 residues), 412.3 bits, see alignment E=3.3e-128

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_2807)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A3Z7 at UniProt or InterPro

Protein Sequence (539 amino acids)

>BT2807 conserved hypothetical protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MYKRMIILTYALVFFSLFATACSDNNNETYVEPILSQIEVSKLVTENNKTYVSVDGKPFP
FLGAQIRLDALLNCDKMTINEVENYFKKAQELGLNCVQIPISWNMVEPKENKYDYSIVNS
ILQFVNKYNLKMELLWFSTNMVGDSFSYLIPQYVLQEYNKRLSRNDEGNFWNYYGYQYTM
ILDDEWILERETKAITALFNHIRYWDSQNGDKHPVISAQIHNEPDALMRWRIDQKDLKYR
DGPPLSKEKAWTMITNALNTVGKAVKNSSYRVVTRVNLIYGDGINPFPEATNARPKDVFD
LQGIDFIGVDAYKDNVKHLKNEVMAYASIAGNYALVAENKGSYANSPSLILTSFALGGGY
DIYDLATSNFFINNTTEPDQIDHGIYTWDLQEKDFTPPTRSLIKGLAAAYIDVAKVKPEN
FAAFNINDNQPKDKLEQLICTTGAQITFQTNNASLGFVLDMHNYLLIYSLNDSQFKLENG
KFGETISGRYDVNGTFTKEGTATLENQTLHAKGGVLYKVNYSSQQSLTSNTIENIGNNL