Protein Info for BT1821 in Bacteroides thetaiotaomicron VPI-5482

Annotation: transposase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 transmembrane" amino acids 123 to 140 (18 residues), see Phobius details amino acids 316 to 334 (19 residues), see Phobius details PF14294: DUF4372" amino acids 4 to 75 (72 residues), 113.5 bits, see alignment E=4.2e-37 PF01609: DDE_Tnp_1" amino acids 120 to 330 (211 residues), 123.5 bits, see alignment E=1e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_2222)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q877R2 at UniProt or InterPro

Protein Sequence (387 amino acids)

>BT1821 transposase (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MFQDKYVFAQLASFLNRSKFNRIVTKYDGDKYVKHFTCWNQLLALMFGQLSNRESLRDLI
VALEAHHSKCYHLGMGKNVSKSSLARANQDRDYHIFEEYAYYLVSEARQKCANHIFKLGG
NVYAFDSTTIDLCLSVFWWAKFRKKKGGIKVHTLYDVETQIPAFFHITEASVHDSKVMIE
IPYEPSSYYIFDRGYNNFKMLYKIHQIEAYFVVRAKKNLQYKSIQWKRRLPKNVLSDASV
LLTGFYPKQYYPKPLRLVKYWDEEQEREFTFITNAMHISALQVAELYKNRWQVELFFKWL
KQHLKIKRFWGTTENAVRIQIYAAICAYCLVAIIQHDMQLDRSTYEVLQILSISLTDKTH
LRDLFDKTKFQNDKERFGPNGPSLFNF