Protein Info for BT1694 in Bacteroides thetaiotaomicron VPI-5482

Annotation: transporter, AcrB/D/F family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 360 to 383 (24 residues), see Phobius details amino acids 389 to 412 (24 residues), see Phobius details amino acids 433 to 451 (19 residues), see Phobius details amino acids 463 to 489 (27 residues), see Phobius details amino acids 522 to 542 (21 residues), see Phobius details amino acids 855 to 874 (20 residues), see Phobius details amino acids 881 to 901 (21 residues), see Phobius details amino acids 907 to 928 (22 residues), see Phobius details amino acids 950 to 972 (23 residues), see Phobius details amino acids 978 to 1005 (28 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1006 (1002 residues), 485.8 bits, see alignment E=2.4e-149

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_1694)

Predicted SEED Role

"AcrB/D/F family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A731 at UniProt or InterPro

Protein Sequence (1012 amino acids)

>BT1694 transporter, AcrB/D/F family (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MNLAKYSLDNTKIIYFFLAVLLIGGITSFGKLGKKEDAPFVIKSAVIMTRYPGAEPAEVE
RLITEPISREIQSMSGVYKIKSESMYGLSKITFELQPSLSASSIPQKWDELRRKVLNIQP
QLPSGASTPTVSDDFGDVFGIYYGLTADDGFTYEEMRNWAERIKTQVVTADGVMKVALFG
VQTEVVNIFVSTNKLVGMGIDPKQLANLLQSQNQIINTGEIRAGVQQLRVTANGMYANID
DIRNQVITTKAGQVKLGDIAVIEKGYLDPPSNIMHVNGKRAIGIGVSTDPQRDVVQTGEN
VKVKLNELLPLMPVGLELQSLYLENEIANEANNGFIINLIESILIVIVIIMLVMGLRAGL
LIGSSLIFSIGGTLLIMSFFGVGLNRTSLAGFIIAMGMLVDNAIVVTDNAQIAIARGVNR
RKALIDGATGPQWGLLGATFIAICSFLPLYLAPSAVAEIVKPLFVVLAISLGLSWVLALT
QTTVFGNFILKAKTGDSTKDPYDKPFYHKFASVLGVLIRKKAVTLVSMVILFIISLIIMG
TMPQNFFPSLDKPYFRADVFYPDGYSINDVVKEMKSVEEHLAKQPEVKKVSITFGSTPLR
YYLASTSVGPKPNFANVLVELTDSKYTKEYEEDFDGYMKANYPSAITRTSLFKLSPAVDA
AIEIGFIGPNVDTLVSLTNQAIAIMHQNPDLINIRNSWGNKIPVWKPVYSPERAQPLGVS
RQGMAQSIQIGTTGMTLGEYRQGDQVLPILLKNNQLDSFRINDLRTLPVFGTGNETTSLE
QVVSEFDFQYRFSNVKDYNRQMVMMAQCDPRRGTNAISAFNQVWSQVQQEIKIPEGYTMK
YFGEQESQVESNEALAKNLPLTFFLMFVTLLFLFKTYRKPTVILLMLPLIFIGIVLGLLV
LGKSFDFFSILGLLGLIGMNIKNAIVLVDQIDLETAAGKKPLDAVISATTSRIIPVAMAS
GTTILGMLPLLFDAMFGGMAATIMGGLLVASALTLFVLPVAYCAIHRIKGEQ