Protein Info for BT1541 in Bacteroides thetaiotaomicron VPI-5482

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 160 to 180 (21 residues), see Phobius details PF04224: DUF417" amino acids 12 to 187 (176 residues), 214.9 bits, see alignment E=3.1e-68

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_1541)

Predicted SEED Role

"membrane protein ykgB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A7I3 at UniProt or InterPro

Protein Sequence (193 amino acids)

>BT1541 conserved hypothetical protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MKEKFIALLTFTSSLKNFGIKFIRVAILVVFVWIGGLKYFHYEADGIVPFVANSPFMSFF
YAKDAPEYKDHKNPEGAFVPENRAWHEANRTYTFSYGLGALIMSIGILVFLGIFFPKVAL
VGDTLAIIMTLGTLSFLVTTPEVWVPNLGGDEFGFPLLSGAGRLVIKDIVILAGAVVLLS
DSSQRVLKTLKKS