Protein Info for BT1204 in Bacteroides thetaiotaomicron VPI-5482

Annotation: conserved hypothetical protein, putative outer membrane protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 858 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13715: CarbopepD_reg_2" amino acids 26 to 110 (85 residues), 61.3 bits, see alignment E=7.5e-21 PF18939: DUF5686" amino acids 128 to 777 (650 residues), 180.6 bits, see alignment E=5.4e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_1204)

Predicted SEED Role

"FIG00937290: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A8G3 at UniProt or InterPro

Protein Sequence (858 amino acids)

>BT1204 conserved hypothetical protein, putative outer membrane protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MIQRYNKILILLLVVFAVSNAFAQQIKGVVTDSVTHEPLMYISVYYQDKRDMGTVTNIDG
EYKLDARRNGGTLVFSSIGYVTKTVKVGSGNQTVNVKLSPDDVMLTEVVVKPQKEKYSRK
NNPAVEFMKKVIEHKKAQVLEVNDYYQYDKYEKMKMSINDLTPEKLEKGIYKKYSFLKDQ
VEVSETTNKLILPISVQETASQTIFRKDPESKKTIIKGKNSNGIEEFFSTGDMLGTVLKD
VFADINIYDDDIRLLQQRFVSPIGNNAISFYKYYLMDTLMVDKRECVHLTFVPQNSQDFG
FTGHLYVLKDSTYAVQKCTMNLPKKSGVNFVNRMDIVQQYEQLPNGNWVLADDDMTVDLS
WSSNKTSGGLQVERTTKYSNYKFDPIEQRLFRLKGPVIKEADMLSKSDEYWASVRQVPLT
RKESNMDVFVNRLEQIPGFKYIIFGAKALIENFVETGSKGHKSKVDIGPINTMISSNYID
GTRFRLSGMTTAHFDKHWFLSGYGAYGLKDEKWKYSGTLTYSFNKRDYVVWEFPKHFISA
TYSYDVMSPMDKFLFTDKDNIFLSMKTTTVDQMSYMRDATINYELETLTGFGVKAMLRHR
NDEPTGKLEYLRNDAAQTRVHDITTSEASVTLRYAPGESFVNSKQRRVPVSLDAPIFTLT
HAMGFKGVLGGEYNFNRTEASIWKRFWLPASWGKIDCSVKAGAEWNVVPFPLLILPEANL
SYITQRETFSLINNMEFLNDRYASMSLSYDMNGKLFNRIPLIKNLKWREMFRIRALWGTL
TDKNNPFKSSNPDLFRFPTRDGKFTSFVMDPKVPYIEGSIGIYNIFKLLHVEYVHRFTYR
DNPGINKNGIRFMVLMVF