Protein Info for BT1028 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 724 PF14322: SusD-like_3" amino acids 106 to 231 (126 residues), 77.6 bits, see alignment E=1.6e-25 PF07980: SusD_RagB" amino acids 307 to 708 (402 residues), 121.9 bits, see alignment E=4.4e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_1028)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A8Y9 at UniProt or InterPro

Protein Sequence (724 amino acids)

>BT1028 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MVTGLICFTGCSDDFLKDKKVYGSYDASVVYENYETAKSRVDFLYQSLLPSSTGGSNALT
DITSAGIDDDFSKCTEEYGDYSIFNDPTASLTIQTVPDYFYVINSERSPWGRIRECNNVI
EGVTGSATLSQTEKEQLLGQAYFFRAWRYYLLVKMYGGVPIVDHVQNPVIGDGNGENLVI
PRSSTKACIDFICDDLELAASYLPARWQNEGQDYGRITAGAALALKGRTLLLYASPLFNR
ADDASRWKDAYDANFAAITKLNEGNFGLAYEGNGGEDNAKNWARMFATYTGGSEAVFVTL
YNNVSPIASQNINRYNLWEQGIRPGNINGGGGKTPTAEIIDIFPMIDGKKPMESGVHYDP
KKFFLNRDPRFYRTFAFPGVEWKFNSGNVDFSGATMSGLCPTRYTSGANYELWNYCWYTT
ADERNNPSRSGFAADMLGTKNRGVYVRKRSDDFDLGTSLYVFTDNSSGDQQGFRRSAAPY
MEIRYAEVLLNLAESACGAGGTYHAEGVKALKAVRGRVGYTSANNYGLDAAIETDRAKLF
EAILYERQVELAFEGKRAYDMRRWMLFDGGVGQGALNASWALSGFGGNTCTYLGVTPMNE
RGKRYRIEINVEGTGSANNDSDPIKNVERPAALTLNEKIATEADGETILDPAVSSICTFY
DTYFSRKDISLDGNVLDINPYFQPRYYFFGLRQSAQQTNATLYQTIGWEDYAHGGMGTFD
PLAE