Protein Info for BT0906 in Bacteroides thetaiotaomicron VPI-5482

Annotation: BatB, conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 57 to 77 (21 residues), see Phobius details amino acids 307 to 325 (19 residues), see Phobius details PF07584: BatA" amino acids 1 to 76 (76 residues), 29.6 bits, see alignment E=1.1e-10 PF00092: VWA" amino acids 92 to 226 (135 residues), 71.5 bits, see alignment E=1.6e-23 PF13519: VWA_2" amino acids 92 to 200 (109 residues), 67.6 bits, see alignment E=2.2e-22

Best Hits

KEGG orthology group: K07114, uncharacterized protein (inferred from 100% identity to bth:BT_0906)

Predicted SEED Role

"BatB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A9A9 at UniProt or InterPro

Protein Sequence (342 amino acids)

>BT0906 BatB, conserved hypothetical protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MFRFEEPAYLYLLLLLPFLAAFYLYSNYRRRRNIRRFGDPELLAQLMPDVSKYRPDVKFW
LIFAAIGLFSVLLARPQFGSKQETVKRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLIS
RLVDELDNDKVGMIVFAGDAFTQLPITSDYISAKMFLESISPSLISKQGTAIGEAINLAT
RSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTND
YRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMAKSDVESKIY
TDFNEQFQAIAWIILLLLLAEMLILDRKNPLFKNVHLFSNKK