Protein Info for BT0577 in Bacteroides thetaiotaomicron VPI-5482

Annotation: LysM-repeat proteins and domains (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 588 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF01476: LysM" amino acids 32 to 74 (43 residues), 38.1 bits, see alignment 5.8e-14 amino acids 86 to 129 (44 residues), 34.5 bits, see alignment 8e-13 amino acids 160 to 202 (43 residues), 24.6 bits, see alignment 9.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_0577)

Predicted SEED Role

"LysM-repeat proteins and domains"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8AA88 at UniProt or InterPro

Protein Sequence (588 amino acids)

>BT0577 LysM-repeat proteins and domains (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MKPISRIFLFLLFISASYAISYAQENQSYFLHTIEKGQSLYSIAKMYNVTTNDIIRLNPG
CDEKIYAGQAIKIPKGKESQKGETFHTIQAGETLYKLTTIYNISAKAICEANPGLSAENF
RIGQVILIPLEQEQETETAQAPAEKPAIQGPVQSRCKDMHKVKRKETVFSVSREYGISEQ
ELIAANPELKKGMKKGQYLCIPYPSATTMQPTAPKEDPYAIPPSNNELFRKSKEAPQAIS
TIKAALLLPFQEDKRMVEYYEGFLMAVDSLKRTGTSIDLYVYDCGKDVSTLNTILAKNEM
KNMNVIFGPMHQQQIKPLSTFAEKNDIRLVIPFSSKGEEVFNNPAIYQINTPQSYLYSEV
YEHFTRQFPNAHVIFIEPTSEDKEKAEFISGMKQELKSKGMSMKTVNENATKDMLKEALR
FDKDNIFIPTSGKNVMLIKILPQLILLVRDTPEQNIHLFGYPEWQTYTRDHLESFFELDT
YFYSSFYTNTLFPAAIQFTNNYHKWYSKDLVSKFPSYGMLGFDTGFFFLKGLSRYGSELE
NNLPKMNLTPIQTGFKFERVNNWGGFINKKVFFIHFTKNFELVKLDFE