Protein Info for BT0462 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative transcriptional regulator (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 transmembrane" amino acids 159 to 179 (21 residues), see Phobius details PF02357: NusG" amino acids 14 to 113 (100 residues), 49.4 bits, see alignment E=5.4e-17 PF00467: KOW" amino acids 135 to 159 (25 residues), 23.7 bits, see alignment (E = 3.2e-09)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_0462)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8AAK2 at UniProt or InterPro

Protein Sequence (184 amino acids)

>BT0462 putative transcriptional regulator (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MNDLDKERQTEGRKAWYAVQTFYCKEEHLGKYLEKKGVNYFIPMRYIEHETLDGKKHRKL
TPAVHNLLFIEKEFTEKELLERVKDCTIPFLLVRDRSTRRCYEIPDCEMLEFRAVCDPNY
KGTLYVDTVTAEARPGQAVRVIRGPFAGLEGKLTQYKKSYYVVVTLATIGVMLHIPKWYC
EKIN