Protein Info for BT0112 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative permease (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 54 to 78 (25 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details amino acids 114 to 132 (19 residues), see Phobius details amino acids 183 to 201 (19 residues), see Phobius details amino acids 212 to 230 (19 residues), see Phobius details amino acids 236 to 258 (23 residues), see Phobius details amino acids 278 to 298 (21 residues), see Phobius details PF03773: ArsP_1" amino acids 8 to 298 (291 residues), 189.3 bits, see alignment E=4.6e-60

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 100% identity to bth:BT_0112)

Predicted SEED Role

"putative permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ABJ8 at UniProt or InterPro

Protein Sequence (301 amino acids)

>BT0112 putative permease (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MNTLLDTLQYFVFITIELIALFLLISAAVEIILMYIPEETIRKKLSGSGIMGNVIAAGFG
ALTPFCACSTIPMTVGFLNAGVPFGSTMSFLIASPLLNPIIIGMLGALVGFKAMVFYFVI
AFICSVAFGYVLEKIGAQKYVKNVRVKPSCCSGSEQPKNKRLLPFRQKIKIAFINAWGSL
RPIMIYLLIGVALGAGIYGYMPQDFVLKIAGADNPLAIPVAAVLGIPLYIRAETAIPIGI
ALMGKGMSIGAVIALVIGGAGMAIPEMSMLASIFKKKLVGMIVAVIFLTAVIAGYVFNLF
L