Protein Info for DVUA0030 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 211 to 227 (17 residues), see Phobius details PF07589: PEP-CTERM" amino acids 207 to 230 (24 residues), 23.3 bits, see alignment (E = 2.7e-09) TIGR02595: PEP-CTERM protein-sorting domain" amino acids 208 to 230 (23 residues), 24.3 bits, see alignment (E = 2e-09)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVUA0030)

Predicted SEED Role

"FIG00603853: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72WQ9 at UniProt or InterPro

Protein Sequence (233 amino acids)

>DVUA0030 hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRVARLAAALALVLALASIGNAATMEIFVRPEGDAVGGQERYGYGSPWYQLDRDATANPN
AVYHWYSDGSGAARWTFLQFDLSDLAGLADAVTGATFNFNLLPDGWGEGTRGNLNHLSNA
ATANGQATQGLGGDQPVGSVTSATILGWNHFDVTEYIKADLAAGFSWSVFSFNQVGYAGM
FFSSGETEERSYLQVTYNGGTVDPNLPTPEPSSVVLMLLGAAGLLAMRRKGVM