Protein Info for DVUA0043 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: polysaccharide deacetylase family protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 TIGR03006: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily" amino acids 3 to 276 (274 residues), 411.5 bits, see alignment E=6.5e-128 PF01522: Polysacc_deac_1" amino acids 35 to 133 (99 residues), 89.6 bits, see alignment E=2.4e-29 PF11959: DUF3473" amino acids 145 to 276 (132 residues), 157.5 bits, see alignment E=2.7e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_3066)

Predicted SEED Role

"FIG004655: Polysaccharide deacetylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72WP6 at UniProt or InterPro

Protein Sequence (283 amino acids)

>DVUA0043 polysaccharide deacetylase family protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRNALTIDVEDYFHVSAFEKAVDPGLWDSLPQRALRNTNHVLDLLDRWGLRATFFTLGWV
AKRHPELVRRMASAGHEVACHGYSHKRITTLNPRAFRDDIQRSRRLLQDLSGQPVNGYRA
PSYTITQDTIWALDVLIEEGFTYDSSIFPINHDIYGMPGSQRFPHTITREGGVIEEFPPT
TYQVEVMGRRVNLPVAGGGYLRLLPATWVSGAFRRLNDSGKPCVLYFHPWEIDPAQPRIR
ATARSRFRHYLNLDSTESKLRHLFSSLRFTTMSSVLFGTVAHV