Protein Info for DVUA0060 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: membrane protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 transmembrane" amino acids 16 to 32 (17 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 175 to 191 (17 residues), see Phobius details amino acids 197 to 215 (19 residues), see Phobius details amino acids 222 to 239 (18 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details amino acids 303 to 324 (22 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 16 to 296 (281 residues), 41 bits, see alignment E=6.6e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVUA0060)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72WM9 at UniProt or InterPro

Protein Sequence (461 amino acids)

>DVUA0060 membrane protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MTDATRRGTRNDTVQALKLLFLLVICYGHLFAEGPAATLPGSTLMDGLPMRLWWVPGDVG
LFFFTATSGYFTALRYPGAAMMQGYWRRKVSRLCGLFLFLNAVLGCVFLATGREGVFTWD
ALVNLLGLNGFLNWFHLGNDSPFGAGQWFFTLLLLFYLVYPVMNRAVTTPARGRLLLWGC
VALAAVMQVRLPYGHSLWSTSVGFVAGFWLARFGGSHPARSGWFALCACLAGAVAYRFIG
HLPVLAYSVIGLAGYVCTVLALTVRLPLLPARVLDAVGDLMLPLYIIHTYFRLPLAQDPY
LDALLVLTMNAGIAWVLLKAYALLAGRRRHAGPPTVAPRGAGMAGSGVPGPGTGGRAKPV
ASPALAAKAHHAANAETPSPQALATHEPAVQAASGLTPAGQTASGQTASGQTPSGQTPSG
QTLSAQALSGQTYSGQTHSGRSSPGRQSSPLPARTKGEGTP