Protein Info for DVUA0085 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1176 transmembrane" amino acids 679 to 697 (19 residues), see Phobius details PF13086: AAA_11" amino acids 257 to 343 (87 residues), 27.1 bits, see alignment 6.9e-10 PF13087: AAA_12" amino acids 849 to 981 (133 residues), 62.2 bits, see alignment E=1.1e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVUA0085)

Predicted SEED Role

"Putative superfamily I DNA helicases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72WK4 at UniProt or InterPro

Protein Sequence (1176 amino acids)

>DVUA0085 conserved hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MHSLARNLTQYFRDSLIDELILDEVGSPKGANTYTTISPEQFERGALPAKLAEGLLGDQD
EQRLLIAPMQLKRGFFRDARHWRQPEVITPMLVPCVLSRDGKLAAQERIMPWFIRDYLDP
VVSADSVVISSVDDVEEFIARNSQDFACTSWQEYLSFCSKMLQDLIGFDADGRVQLGHAA
YFACNEPRVYLDSGQGGATSNIKKLYDSVLKKKDMPKAYESFVAGCSAPRALLTLEEEVD
VAAHSHLGQMSGAFGLGASQRETIHHFLSINEGEVLAVNGPPGTGKTTLLQSAIASLWVK
AIMVAGNDYPDPPVIVATSSNNQAVTNVIRDFGEVLKLESDNPLEMRWLPEGVGSLGTYA
VAEARQKKLESEDNRLLCVSLAWVSGGYKLKGFFEKTESPEFIGQAVTTYLEMYERFSGA
SMKREAPAELVKAIRKELRRRMLHIAADMQETLASWKRCRQDVERKAETEKNLTGLKTSL
RRCTEASSAKATQLIKAGEELTRTGTVAMEAASTIAGQPFWESLLGALGFVKERRRARAK
AFTLKHGLEMDPAPQSLHDVEKHVDDLLDTVKKRHKALSRELDELQRAAAGMEQEKGELK
ALLQGIAGRASRLAEILGVQECELDFTRAGLYRVLDQFDRNARFEMFLLAVHYYEGLWLE
HMLRSENGKVSGKDRLKRLAMLTPCIVSTLFMVPKFFSESGAPLYEFVDLLILDEAGQAG
PDKAAAVFALAKRGLVVGDVHQIEPVYKIPVSVDLGNLKRNNVYVGREEEMPRAVAVSKG
SAMRMAQDASPYHCILNGHPAEERGMYLLEHRRCHKDIIGYCKELVYPHLEVLTRQEPDD
FYLFPPLGYAHIPSSGQKKGGSWCNPYEAHNIAQWLADNRDRILARYKASSLASVIAIVT
PFARQVSSLRESMQGCLPESDYAEMVVGTVHKLQGAERPIIVFSPVYGPGNVAVPFFDRG
RNMLNVAVSRAKHSFLVFGNMALFDPGNGRPSGILGKHLQCNMMAGELDGFRLAPRPIQG
RIEHLTTLDQHRETLRKAFETVREQLVIVSPFITRNALKADNVLEMIRSAVGRGAAVDIY
SDSRLALSCCQNQQAALDDLAQAIRDAGARIEFKNGVHNKTLIVDKHTLVEGSFNWLSAR
RDDLARREHSISYHGIEAGALMEDILPGLSESDTKG