Protein Info for DVU0610 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details PF02470: MlaD" amino acids 40 to 116 (77 residues), 61.9 bits, see alignment E=2.8e-21

Best Hits

KEGG orthology group: K02067, putative ABC transport system substrate-binding protein (inferred from 100% identity to dvl:Dvul_2344)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72EG8 at UniProt or InterPro

Protein Sequence (306 amino acids)

>DVU0610 conserved hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
METRASYILVGVFTLLAVTGALAFVLWTAGRGEGKAMAAYDVHFSGNVMGLSVASDVFFN
GVKVGAVKQITLNPDDPAKVKVRIEIDATTPVREDSVASLEGRGLTGVSVVQITGGSPHA
PLLVGTAGEVPVIASRASRLEELFAGMPQLVGSGNELVNRLADVLNAENRAALASTFHAL
DTVTARMAARADSLDRIITNMDTTTRRLANASAGLETLAGDMRDLTRGDMRDSIVAVGNT
ARRLDALLAAAEPGVTGFSTEGLEDMRRLLIESRHLVTTLNRMAQRMESDPRRFMFGNQL
PEYEER