Protein Info for DVU0550 in Desulfovibrio vulgaris Hildenborough JW710

Name: livG
Annotation: high-affinity branched-chain amino acid ABC transporter, ATP binding protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF13476: AAA_23" amino acids 12 to 51 (40 residues), 27.3 bits, see alignment 1e-09 PF00005: ABC_tran" amino acids 20 to 186 (167 residues), 101.2 bits, see alignment E=1.5e-32 PF12399: BCA_ABC_TP_C" amino acids 236 to 261 (26 residues), 53.1 bits, see alignment (E = 3.6e-18)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 100% identity to dvl:Dvul_2394)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72EM7 at UniProt or InterPro

Protein Sequence (262 amino acids)

>DVU0550 high-affinity branched-chain amino acid ABC transporter, ATP binding protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MQTVLDVRSISKNFGGLRALNEVDLRVDAGEIVALIGPNGAGKTTFFNCITGIYVPTEGE
VVVTRPGSEPVRVNGQKPNQVTELGMARTFQNIRLFQNMTVLENVMIGCHCRTRSGILGA
LLRDAKTRGEEQEIIDKSYELLKSVHLQQHYKEQARNLPYGAQRRLEIARALATNPFLLL
LDEPAAGMNPQETLELKGLVLEIRERLNLSVLLIEHDMNMVMSLSDRIYVMEYGSKIAEG
TPEEVSRNPRVIKAYLGEEEHA