Protein Info for DVU0543 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 46 to 66 (21 residues), see Phobius details amino acids 87 to 103 (17 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 204 to 227 (24 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 280 to 300 (21 residues), see Phobius details amino acids 312 to 330 (19 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details PF03601: Cons_hypoth698" amino acids 48 to 341 (294 residues), 162.5 bits, see alignment E=6e-52

Best Hits

Swiss-Prot: 100% identical to Y543_DESVH: UPF0324 membrane protein DVU_0543 (DVU_0543) from Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_2400)

Predicted SEED Role

"FIG00604799: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72EN4 at UniProt or InterPro

Protein Sequence (369 amino acids)

>DVU0543 conserved hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MQEKGLAGKMMDIVPGLLVMVGTLYVLRTYVEPWMKDAVVFGRKGWLVQVLSLNYILLSI
LTGMFYRNILFGGKIPGWAEEGFRTTRLFIKTGVIMLGSLYTFDKLLKVGGVAITLIVAF
VFGTAIFIMWLGSRLGADRSVTATMAAACGVCGVSAAVATAPGVRAKPVDLALSIATILG
FGIMTMFVSPFIGKALQLSDYQFGAWVGTGILNSGQVLATCLAFNPVFAPGTAVAYGEIW
NVVRVICIPFVVFFITAWYWKGEADAEHTSLGSILASKFPIFVLGFVGMTALSSLHMLGA
EGSETLHLMRDVMAWIFGVGLVGLGAYIDVREIKAAGGVPLRIGLIAGMVKYILALIIIL
AFIPKEGAF