Protein Info for DVU0406 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: membrane protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 transmembrane" amino acids 19 to 41 (23 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 146 to 162 (17 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 204 to 223 (20 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 294 to 310 (17 residues), see Phobius details PF00892: EamA" amino acids 27 to 160 (134 residues), 86.6 bits, see alignment E=9e-29 amino acids 175 to 310 (136 residues), 97.9 bits, see alignment E=2.9e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU0406)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72F12 at UniProt or InterPro

Protein Sequence (312 amino acids)

>DVU0406 membrane protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MASDCTAHYNTAFSLQSALWRFLVILYLKLLLAAFFWGGTFVAGRIGAAHAGPFALAFLR
FTLATAILVWHIRRREGALPQVSGSRNILFVLLLGATGIFAYNALFFTALQTIPAGRAAV
VVANNPIVIALGAALFLGEPLTRRKCIGIAISVCGALVAVTRGDPVSFLQGGVSWGDVAL
VGCLASWAAYSLLGKKAMSSLSPLAAVTWSCASGACMLLPFALHEGMLDAITTYTPDVWA
SIFYLGMFGTALGFTWFYEGVDRIGAAKAGVFINFVPITAILSGWLFLGEPLSPSLILGA
ALVLTGVYTANR