Protein Info for DVU0397 in Desulfovibrio vulgaris Hildenborough JW710

Name: rlpA
Annotation: rare lipoprotein A, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF03330: DPBB_1" amino acids 65 to 153 (89 residues), 87.6 bits, see alignment E=5.4e-29 TIGR00413: rare lipoprotein A" amino acids 67 to 232 (166 residues), 162.4 bits, see alignment E=6.9e-52 PF05036: SPOR" amino acids 170 to 241 (72 residues), 68.7 bits, see alignment E=4.4e-23

Best Hits

KEGG orthology group: K03642, rare lipoprotein A (inferred from 100% identity to dvl:Dvul_2537)

Predicted SEED Role

"Rare lipoprotein A precursor" in subsystem Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72F18 at UniProt or InterPro

Protein Sequence (243 amino acids)

>DVU0397 rare lipoprotein A, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MPNTILRLLLVSLLLFCTASLVSGCGSSRSGVSYPKGQPSGPRAKPYTVRGKTYYPLKSA
HGFVEEGVASWYGSDFHGKKTANGERYDMYAMTAAHKLLPFNTNLRVTNLANGKQIIVRV
NDRGPFVGDRIIDLTHTGASRIGMIGPGTARVRLETVGDVPGLMQDGDLSGSFYVQIGAF
SSQENARRLSARMQQRGFKARFYYAELVSFWRVQVGPWSTLSEAERMRQQLRSEFPGDFV
VAE