Protein Info for DVU0347 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: transferase, hexapeptide repeat family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 PF00132: Hexapep" amino acids 168 to 203 (36 residues), 40.5 bits, see alignment 1.4e-14 PF14602: Hexapep_2" amino acids 169 to 203 (35 residues), 38.6 bits, see alignment 7.2e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_2637)

Predicted SEED Role

"transferase, hexapeptide repeat family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72F67 at UniProt or InterPro

Protein Sequence (223 amino acids)

>DVU0347 transferase, hexapeptide repeat family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSGRLRNALHKIRDRGLTPRDLFSYGCIAGHRLLSGAWGTLMLRAKAGCLGITVGKGCEC
FGTVILSRWPGSRIELGDGVSIISSSRRCTSATIHAPTRLRTFAPTARIILEDGVSLNGT
AITARSRTIRIGKGTMVAPNCVITDSDFHAMWPPETRLDTPAFERDADVTIGQHVWLGMR
CIVLKGVTIGDGAIVAAGSVVTRDVPPATLVAGVPARVVRHLP