Protein Info for DVU0166 in Desulfovibrio vulgaris Hildenborough JW710

Name: oppD
Annotation: oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF00005: ABC_tran" amino acids 24 to 183 (160 residues), 96.1 bits, see alignment E=4.5e-31 PF13304: AAA_21" amino acids 129 to 218 (90 residues), 32.5 bits, see alignment E=1.3e-11 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 232 to 326 (95 residues), 70.7 bits, see alignment E=4.4e-24 PF08352: oligo_HPY" amino acids 234 to 306 (73 residues), 52.3 bits, see alignment E=8.6e-18

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to dvu:DVU0166)

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72FP7 at UniProt or InterPro

Protein Sequence (328 amino acids)

>DVU0166 oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MEALLDVQNLTVKFALRDEALTAVNDVSFTLGRGERLGLVGESGAGKSVTGFSIINLISK
PGFIAGGSVLFEGNDLVTTDAETLRDIRGNRISMIFQDPMMTLNPVLTIGSQMVETILAH
QKMSRREAEEIALDKLRKVYIPSPEKRLKQYPHEFSGGMRQRIVIAIALLTSPSLIIADE
PTTALDVTIQAEIMDLLLELCESEKMGLILITHDLGVVSQVTQKIAVMYAGRIVEMGETA
RIVADPQHPYTKGLLAALPQGNSCGGGCVGKRHRLNQIPGAMPSLSEIAHGICPFHNRCE
LCQDVCRTSRPRLLPKRNGGLVACHLLD