Protein Info for DVU3386 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: permease, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 313 to 342 (30 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details amino acids 379 to 401 (23 residues), see Phobius details amino acids 421 to 440 (20 residues), see Phobius details PF03773: ArsP_1" amino acids 23 to 398 (376 residues), 159.4 bits, see alignment E=5.7e-51

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 100% identity to dvu:DVU3386)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q725N8 at UniProt or InterPro

Protein Sequence (460 amino acids)

>DVU3386 permease, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MFIMQPEDTMTLIHDIILASWDILLEAAPYVLFGFFVAGLLKAYVPASFVARHLGRGHVG
PVFKAALFGIPLPLCSCGVIPAAAGLRQQGASKGATTSFLIATPETGVDSMAVTWALLDP
VMTVARPFAALLTSVAAGLMVDLFPERKRGESEISPPVMSPSRDAALHDGPTTLPAPVIA
PVLHGAAGIAAAGSVSLGPIREHAACTCSGHASVAASACCGTSHSVSAPSGASCGCGSAA
HAHSGTGCCGHDTPIGQVSGGFSGVVERFRGGMRFAFGELVADIGGWLLLGVVLAAVITI
LIPDDLFSGTFASGIGGILLMMVVGIPLYVCATASTPIAAAFALKGISPGAALVFLLAGP
ATNVATITVVARMLGRKAAVIYVAVIGVMSVALGLAVNMLYGWLGMGVTGWVQGSADAEP
GMLSAVAAVVLLLLVLYQWLPALVARLRGEAHPAGCGCGH