Protein Info for DVU3240 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: peptidase, M23/M37 family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details PF01551: Peptidase_M23" amino acids 201 to 295 (95 residues), 123.2 bits, see alignment E=2.1e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU3240)

Predicted SEED Role

"Membrane proteins related to metalloendopeptidases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q725J0 at UniProt or InterPro

Protein Sequence (301 amino acids)

>DVU3240 peptidase, M23/M37 family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MLFGKYHIVILRERGGSCRNLFMRGWCGIAGVLFVASLMGLTIWLAGKYLHTYEVEQRLA
EAEKTIEEQSTQLLAMTGKLQGLQADLTRVQQFDTKLRLMINMEKDPTEVQTSMGGSRTE
DLSKGYLPLHRQELLARKMHTFIKQLATDVRLEEVRQQELLHALRANRDILAATPSIWPT
EGFISSTFGSRKSPFTSRGEFHKGLDINNRPGTPIWAPARGTVTFAGTDGAYGNCVILQH
GAGLSTRYAHMQRFVVKEGQSIQRGDIIGYVGSSGRTTGPHLHYEVRVNGVCVNPMRYIL
N