Protein Info for DVU3239 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: PAP2 family protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 transmembrane" amino acids 27 to 51 (25 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details PF01569: PAP2" amino acids 77 to 202 (126 residues), 72.8 bits, see alignment E=2.3e-24 PF14378: PAP2_3" amino acids 132 to 194 (63 residues), 31.8 bits, see alignment E=1.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_0149)

Predicted SEED Role

"PAP2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q725J1 at UniProt or InterPro

Protein Sequence (221 amino acids)

>DVU3239 PAP2 family protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MPFATPSWDLALFRLANGTWRTPLLDVLMPAVSGMALWLLLAVVAGGFLWLRRRSGPQGA
ALLPERPLWRRVAAVLLLAGLAAGVTDATCNVIKGQAGRLRPMQALAGVHMVDEGAWSIT
PPDFVPTAVKGSSFVSSHAANSMAVCLVIMLAVPLLRPWLLPVPLLVGWSRLYLGKHYPS
DILAGWVVGLVMGYLAWRVWRYCMHHVLHEDACVRAGGGHG