Protein Info for DVU3128 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: lipoprotein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF03886: ABC_trans_aux" amino acids 33 to 194 (162 residues), 143 bits, see alignment E=3.2e-46

Best Hits

KEGG orthology group: K09857, hypothetical protein (inferred from 100% identity to dvl:Dvul_0256)

Predicted SEED Role

"ortholog of Bordetella pertussis (BX470248) BP2750"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q726I0 at UniProt or InterPro

Protein Sequence (205 amino acids)

>DVU3128 lipoprotein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRNSRTGLAAALVLVCAVASSGCGGAQAPTRYYSLLAEAGQRPSAAPTEKTLSVSVGPVI
IPDILKQTRIATSKGDGSYNLSEYHRWSGDVDRDIARALAEHLGRGLGTEQVFVFPWDQA
GAPAYRVLADVISMGGNPDGEATLHVRWTVVPRSGAAEPVTRRTDLSEKCPGPDHADWVA
AQQRNVEHLAAAIAATILDLHGQGT