Protein Info for DVU3071 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: oxidoreductase, FAD/iron-sulfur cluster-binding domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1187 PF01565: FAD_binding_4" amino acids 138 to 277 (140 residues), 127.8 bits, see alignment E=1.1e-40 PF02913: FAD-oxidase_C" amino acids 396 to 509 (114 residues), 34.7 bits, see alignment E=7.4e-12 amino acids 551 to 686 (136 residues), 79.6 bits, see alignment E=1.4e-25 PF13237: Fer4_10" amino acids 724 to 801 (78 residues), 34 bits, see alignment 1.1e-11 PF13183: Fer4_8" amino acids 726 to 804 (79 residues), 43.7 bits, see alignment 1.4e-14 PF12838: Fer4_7" amino acids 728 to 804 (77 residues), 32 bits, see alignment 6.2e-11 PF13187: Fer4_9" amino acids 728 to 803 (76 residues), 32.9 bits, see alignment 2.3e-11 PF13534: Fer4_17" amino acids 728 to 804 (77 residues), 26.1 bits, see alignment 4.5e-09 PF00037: Fer4" amino acids 787 to 803 (17 residues), 21.6 bits, see alignment (E = 6.7e-08) PF02754: CCG" amino acids 913 to 1001 (89 residues), 25.9 bits, see alignment 3.9e-09 amino acids 1041 to 1129 (89 residues), 18.4 bits, see alignment 8.7e-07

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU3071)

Predicted SEED Role

"oxidoreductase, FAD/iron-sulfur cluster-binding domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q726N5 at UniProt or InterPro

Protein Sequence (1187 amino acids)

>DVU3071 oxidoreductase, FAD/iron-sulfur cluster-binding domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MPHKGPHISISADFVVNRMLRINLDEFEDWPEAVREVAIEIAEELFLVVYNPFIDAETVK
TSVRTRFESEKPALAHHYATSIGEGITMFWSAHEAEVAFRDELIRRLGQMLPKACIDSRP
AALVENSTDATDLRMELPILVVAPDTAEQVSAIVRLANEMKFAIIPRGGGSGLTGGAVPA
RRRTVIMSLTRLTRITSVDTDALRLCCEAGVITNDAIRAASAKGLLFTVDPASKTASTIG
GNISENSGGPFAFEYGTTLDNLLSWRMVTPTGEIIDVERADHPGHKILPDETAVFEVKDV
SGGVRNVVHLRGDEIRLPGLGKDVTNKALGGLPGVQKEGVDGIITEACFALYRKPVYSRV
LVLEFFGRSMHNAMLVIKDVIGMRDRIRQDGDYVKFSALEEFGTKYVQAIEYRKKSDVYE
GEPISVLIIQMDGDDEYLLDRTVQEVVDIATPYDNVDAFVARDEKEAEVFWEDRHRLSAI
ARRTSGFKINEDVVIPTDSIPDFALFIEQLNLECSAQAYRSALQEVGRLQGMPMEDKDIN
REFTYASRAGRGDISASELSDEEMQIRAVVFLGELGQKYPNLARRIERIKDHMLATRIIV
ANHMHAGDGNCHVNIPVNSNDPVMLHNAEQVAARVMSKAQEFGGEVSGEHGIGITKIGFL
RADKMEALKEFKARVDPRNVLNPAKLTQRELPVRPFTFSFNRLIEDIRQSGLPDKERLIT
LLANVQICTRCGKCKQVCPMHYPEQSLQHYPRNKNIALGALIEAVYYSQVNKGRPDPLLL
TEVRTMMEHCTGCGKCAAVCPVKINSGEVALALRAFVEEEGAGGHPIKSRVLDWLVGDPA
ARVPRAAKLAAVGQKVQNRFVGLVPAGWRERMDNPLFAGPGPEVGYNNLAEAVRLDKGSI
FVPAQGDRTTEAVLYFPGCGGSLFYRNIGLAGLMLMLEAGVGVVMPDRHLCCGYPLLAAG
ADESFTKNLDRNRTALRAVIEKARAAGLEVSHVITACGSCRDGLARHELPGLFGGGMQHK
DLVQFLVERMPATTKAEGREVLYHPACHAEWTGVHKVKAAGIYAQALGAFTGARLRVNPG
CCGESGMGAMTSPSIYNRLRRRKRQRLEVDFASYDPQGPVVVGCPSCKVGIARTLLALRD
KRPVLHTVEWLAALRHGEDWRRHFRRAVLDSLGREAVRTVDMSGLDG