Protein Info for DVU3012 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: membrane protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 599 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 79 to 81 (3 residues), see Phobius details amino acids 84 to 121 (38 residues), see Phobius details amino acids 123 to 142 (20 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 224 to 247 (24 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 305 to 323 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU3012)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q726U4 at UniProt or InterPro

Protein Sequence (599 amino acids)

>DVU3012 membrane protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MYPHEGYHAYFRFPFGRHPLRYYALDGGSAPNALANLFFSTAYAHGRDRGNRAYDITLVL
TGVCLFGITLALTGDARIAAATLTVYHLLNLAPLATLSFCNAETVVNFMTALGTLVTLCG
MQADMPAISLVGAFIATLGFQAKACTFDHLWPLACALVLPVPAQHAWMALAGTAAGHALY
GILVIVASGRGVFHRLRALLGLHRRNAAQRNDGFAYRTMLRDFAFYLFEHLRVVLPFTPF
LPLYFMAHGPDARLPWLMLALFTLSALHMLVRGVFAIQYGVLTHFPLAFATAACLVPHGG
DMLSHPFATAAILLTGLWFSVHGYRDNAQNHLGEWRTATFFVRRFIIDYLKPRLEPGDHI
FQDGHFTALYVETGAPGPIPELVWAVHARNNALWDEGHRRAFNAFFRETRPRWLVLFADQ
LNLDALERAYGLRYRLESARFTRIYRLAETVPPEAAEDFDPRTLYSGPGARHASDIDALE
KRAAFLTARAQQRLAEGRTEVAAEMLRDVWESAGHLPGTGVAYALALEAAGDAGGAVQVL
RDDLLLHPEGGAAPHLERLVPAVVPQGSIARLHRALLPSILAADCYLHKKGKAAVNATR