Protein Info for DVU3005 in Desulfovibrio vulgaris Hildenborough JW710

Name: rfbE
Annotation: aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 PF01041: DegT_DnrJ_EryC1" amino acids 11 to 264 (254 residues), 241.7 bits, see alignment E=7.5e-76

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_0367)

Predicted SEED Role

"Aminotransferase, DegT/DnrJ/EryC1/StrS family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q726V1 at UniProt or InterPro

Protein Sequence (344 amino acids)

>DVU3005 aminotransferase,  DegT/DnrJ/EryC1/StrS family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRVIIEEAYRQRLHERLEEVFDSGFLSDGPMTRRFEEAFGTFTGLGAKAVSNGGAGLWAL
LEYAGVRGGEVIVPANTFWATALAARRAGATPVYADCCRDDLCLDLEDVRRKVTPATRAV
VLVHIGGHIAFRAEEIASFCRERGIALIEDCAHVHGGTWNGKTGGHYGIGGSYSFYATKT
MPLGEGGMVVSADPAVLEFVERFRNYGKQVVDGVVTYPMKDAFNFRMSEMQAALGMVQLE
RMPRILAWKRELAARYDAIFENRVRFPEGMESGYYKYIVFDAPALREATGKVFARTDLGP
VIEDKDWNLPGTAWVVEHHQCPPIWYGWDGFDLDVPGLRARLLG