Protein Info for DVU3001 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 PF05114: DUF692" amino acids 113 to 242 (130 residues), 49 bits, see alignment E=2.6e-17

Best Hits

KEGG orthology group: K09930, hypothetical protein (inferred from 99% identity to dvl:Dvul_0371)

Predicted SEED Role

"UPF0276 protein VV3194"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q726V5 at UniProt or InterPro

Protein Sequence (265 amino acids)

>DVU3001 conserved domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSGVRLCVPVTDCYAGARHDIDPYLGGVEFKGGTPPCPVPDGVDVLMESPHGIISDDLWV
WLERQRVFDFMAARGIRSFACDLGPACRRYENRPTAGRFVRSYPASEVLGQDALIEVAQE
GVARIREHFDGTLKFEILNYYPTGVYDHVCDPAFIHRFLDALDAQLLLDIGHARISAAHL
GYDFAAYLDALPLHRVTEVHYSRPGLELGVWEDTHERPGADEALALRHILARAPVRHVVI
EYYASPADLLSTVRDLHTLLVEVAA