Protein Info for DVU2913 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: lipoprotein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 transmembrane" amino acids 111 to 134 (24 residues), see Phobius details amino acids 156 to 173 (18 residues), see Phobius details amino acids 218 to 241 (24 residues), see Phobius details amino acids 247 to 269 (23 residues), see Phobius details PF07136: DUF1385" amino acids 71 to 318 (248 residues), 252.5 bits, see alignment E=1.6e-79

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_0452)

Predicted SEED Role

"FIG069887: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q727E2 at UniProt or InterPro

Protein Sequence (335 amino acids)

>DVU2913 lipoprotein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MIDHRPTSWSRLCTALTSGASCTIGGQAVMEGVMMRNGDRLAIAMRRPDGEIVAESRPWF
SLTRSAWLKRPFVRGFPILVETLVNGIKALNRSAEQAVEGETGEELKPWQLAATLAVSVA
MALGLFVVVPHLFSIGMKLLGLGGDVEGLSFHMWDGFFKFAVFIGYIVAISFVPDIRRVF
QYHGAEHKVIRAFEAAGDVTPDTAMHHSRLHPRCGTTFLLFVLSISIILHAVLVPLLMLV
WTPSGAFAKHGVTVLFKLLLMIPISALAYETIRYAARLGEGLTGTLLRAPGMLLQKLTTG
EPDREQLEVAIVALREALGDDAPQSVRAPAYRHLE