Protein Info for DVU2896 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: TPR domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1076 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF13432: TPR_16" amino acids 499 to 537 (39 residues), 15.9 bits, see alignment (E = 7.6e-06) amino acids 620 to 685 (66 residues), 19.3 bits, see alignment 6.9e-07 PF13174: TPR_6" amino acids 506 to 536 (31 residues), 15.6 bits, see alignment (E = 1e-05) amino acids 543 to 574 (32 residues), 18 bits, see alignment (E = 1.8e-06) amino acids 656 to 685 (30 residues), 19.3 bits, see alignment (E = 6.7e-07) PF13181: TPR_8" amino acids 656 to 685 (30 residues), 17.3 bits, see alignment (E = 2.1e-06)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2896)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q727F9 at UniProt or InterPro

Protein Sequence (1076 amino acids)

>DVU2896 TPR domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MLAKPVMRKTPAGLARFLLAAWLILPPMAHEAFAASWQWASMPRRERVTIALDAPQADIR
HSRTGRQEITLPLGGSGLLQRTGPTPASARILDDVKVEGADVRISTRTPGFGYILTRPDP
GHVVIDLFEDPLGNSWQPDTTAPAATATAATATAPATTAPVGQAAEAMAPQAPQTTVTPQ
RPSAQTEAAPAAPAPVAPPVAPPAPLKSRGIVETPLTDARPVTGTVSGQLAPGNPVTPLP
AQEPAAPTADAAPAPGPTTAPPPLPAPHTGADRQRAYFTVPYALRGRVNFGGPEDWPQEQ
AVSASFGAPQGNATNGATAQADNAVGGRMAPRDGTAVTAPAGTPQQPAGQATADQTAQGQ
TADAPAPLQPVTPQADPTAQASASAPANATVAHSPAGNGTAANATGVVYVDEKGNPVPPP
PDPPQLLAEAKSLISTKDWPGALERLGLLKGLPDIPSDMREEVLYLISDTLFAQHKDTIL
EGYESIMDATSEAMNYNIRSPRVPLALLRLGLLNLRAGNTREAEAYFALMKRQYPHDDNI
PLAYFYLGEDQFRKGQYQKAADQFQYILQNHPESRYVRESSVFLARSLHRLGYLEQASAI
MDFVDKRWPRLYLETPEYLLMAADVETQTGRLDQARASYWTYFNIHPEGAENDVVLAKLG
DIYAQQKQDKAAREIYEEALRRFPDKDGGLIALLRLTEQGIYDKPDVAAMFSVFDKPGAS
DPAEAYNRIIEGHPKSALVPMARIKLAMWHLWKQKYPEALEAMAEFAAQHGKHELLDKAR
EVAVRAFGLLAADAVKEGDYDRVLRFWEDYPIVREQAKNFGPELRLALGMSFWKKDRPGQ
ALEVLEPLIKQPPDAKYGEAAMNLSLTVYLGTESWQPILDLANNVAGWKLSPPAQRQRDY
AVALAHENLKQQDKSVPLWEKLDKDPDLPEDQKAYVTFFLSRDAERKRDLQQAYLLNKDA
LARFVALGEKDKEKADNARIRDCIASLMDITEAAGRTREALDWAGQFAHYLTKDTPEYTA
LDYRVARLHRKLGDLGEWRRILDGIIAKEPDSVYGKMAASELRTYDVTRGASSFTN