Protein Info for DVU2175 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: adenine specific DNA methyltransferase, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1595 PF13156: Mrr_cat_2" amino acids 31 to 154 (124 residues), 139.4 bits, see alignment 2.4e-44 PF04471: Mrr_cat" amino acids 58 to 141 (84 residues), 32.4 bits, see alignment 3.5e-11 PF04851: ResIII" amino acids 163 to 356 (194 residues), 82.6 bits, see alignment E=1.3e-26 PF00270: DEAD" amino acids 166 to 356 (191 residues), 31.4 bits, see alignment E=6.3e-11 PF00271: Helicase_C" amino acids 499 to 579 (81 residues), 29.4 bits, see alignment 3.2e-10 PF22240: ISP_coupler" amino acids 697 to 820 (124 residues), 167.4 bits, see alignment 7.4e-53 PF18135: Type_ISP_C" amino acids 1201 to 1572 (372 residues), 373.3 bits, see alignment E=4.8e-115

Best Hits

Predicted SEED Role

"putative helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72A22 at UniProt or InterPro

Protein Sequence (1595 amino acids)

>DVU2175 adenine specific DNA methyltransferase, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MLHQILQKYREQEYQRDKGDAFERLIRAYLKTDPQYQALFSDVWLWKDWPEREALGYKRP
DTGIDLVARFRDGESYCAIQCKFYENAISQGDLGTFFTLSGKGGFSQRLIVATAPLSKNA
ADAIEHQTIPVALLTLEDLASAPIDWTQCTIAAPDTLKPIEHKKPRPHQNEALEAVRKGF
SAHDRGKLIMACGTGKTYASLLIAEDMVAPGGTVLFMVPSIALLSQTLRAWTADSTKPLR
CFAVCSDSKVSRDDEDMRIAEMAYPATTNATKLAAAFNATQDTSRLTVVFATYQSIAVVH
EAQQQAGFTFDLIVCDEAHRTAGYTPKGEDHSAFVRIHDADYIRGQKRLYMTATPRLYAE
QSKSKAKERDIAVFSMDDEATFGKEFHRLRFDEAVRRDLLSDYKVLIIAVEEKHVTLALQ
SRIEDNSDELDLDDAVKIVGCWNGLGKRLAEDDTADKHSDPLPMRTALAFAGNIKNSKRL
AGEFVRIAAELGDAVPLPKLEAQHVDGTMNVVERNQKLAWLKENANAAPADAPATCRILT
NAKCLSEGVDVPALDCAIFLSPRDSVVDVVQSVGRVMRKADGKKYGYVILPIGINMGGSP
EKALDNNKKYRIVWQVLNALRAHDDRLDNQFAKIDLTGKAGGVVEVDIIGGTGEGSGDRT
DKFRTEWLSLPVADAYGAEWQNAIYGKIVHKCGDRLYWETWAKDIADIAERHQGRIRLML
ENPTQEQQQAFETFLHGLQSNLNPSIDAGQAIEMLAQHVITKPVFDALFSGYAFTEQNPV
SQAMQGIMDVLAGKALEKDLDHLEGFYADVRRRVQGIDDPAGRQKIIVELYDKFFKTAFP
KMVERLGIVYTPVEVVDFIIHSADKALREHFGCSLQDEGVHILDPFTGTGTFPVRMIESG
LIPPHKLAHKYAHELHANEIVLLAYYIAAINIEEAYHRVTQGDYQPFPGICLTDTFQLGE
AANVARVHAGEVVTAGDCPENSERVEAQKRRDIRVIVSNPPYSVGQGNANDNNQNLKYAH
LDGRIAATYAAHSTATLKNSLYDSYIRAFRWASDRIGNEGVICFVTNGYWIDSNTADGFR
HVLEEEFTSVHVYNLRGNARTQGELRKKEAGNVFEGGSRTPVAITLLVKKAEHTGKARIF
YHDIGDYLTREQKLAAIAKAHDYRGLEWQALEPNSHDDWLNQRDETFGKFMPLNEDGRAS
IFCMRSGGLKTNRDAWCYNFSGQRLAQNIKSSIDFYNNEVDRYQLIIHEGGDVAASDIIN
FDKTKFLWDRQQKQDIVKKKKYTFLATSIQCSSYRPFVKEKAYFNRHLNNCVYKQPSIFA
SPDCVNFAIQTPGAGSTKKFSAIMVDVVPCLWAEGSQCFPLYHYEKKTVSTERQLSLLSS
ESEDSGQDGYVRKEAITDEGLEVFRKHYGDATIGKEDLFYYVYGVLHSPQYREKYAADLK
KMLPRVPFAPDFWAFSKAGRELAHWHLKYETVEPWPVTEERQPQDGRDDFAYYHVEKMRF
PKKGEKGTIIYNGNITFKDIPLEAYGYVVNGKSAIEWLMERYAITVDKDSGIRNDPNDWC
REHDDPAYIYNLVKRIIRVSMETNRIVSGLPECEG