Protein Info for DVU2102 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: outer membrane protein, OMP85 family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 776 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01103: Omp85" amino acids 485 to 776 (292 residues), 173.3 bits, see alignment E=5.3e-55

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2102)

Predicted SEED Role

"outer membrane protein, OMP85 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72A95 at UniProt or InterPro

Protein Sequence (776 amino acids)

>DVU2102 outer membrane protein, OMP85 family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRTMQMRALLSCLVLVLVLSGCSGRTRPVSDGGGSDPFPTVVPPPQAGQGSAHDRGPGDA
PDTNAAHHTDMQLPSASGNATSLTQHILPEGLTPPQVPADLCAGAPTAKQDTSHDARPVP
YEVTFSIADDAGASSVSTEERSALLDAVRGVSLLERLADQAPDSVTGVERRLRSDEDEAR
NVLHSRGFYAGRVEGRLDAASSPLRVTLTLFPGPLYTVADSRVVYRAGAGHSEVADDKAG
MTGVVGMVGPADAPDQTSASDQTSATGQAADSAGAGDDVPSPSFAHGTPEEGGMKGRPAG
IAVPTADADSAPVPEGFPRALSDAGVAGGAPARADDILDAVARIPVFLHERGHPFAVVTG
TRFEVDHAAHTLHATVTVDPGPYVLMGGLDVEGADDVSRDYVATYVGWRPGQPWDERLVE
RFRESLRGTGLFSGMEVVPADHDDATGCRPVMARLTYGPPRSFGGGLRYDSALGPGVLAF
WEHRNLWGGGERLRLELPVWERRQEVVASFRKPFLLRPDQDFIADAWARNENSDAYDQRA
GAVSASVERRISRHLWASAGGTTEGGSINDHQGPERSYSMWGVPLTIRYDGTDNLLDPHE
GVRAALSTTPYTGVYHEWRSMVRSRLDASAYTALPGGRTVLALRAAAGALHGESPADIPA
SFRFYSGGGGSVRGYAYQSLGPRDGDVPLGGGSFGEVGLEARTRITETLGLVTFVDGGNV
YEESMPRFGDGMRFGAGVGLRYYTAIGPLRFDVATPVNPREDDAPLQFYFSIGQSF