Protein Info for DVU2062 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: ATP-dependent DNA helicase, UvrD/REP family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1152 PF00580: UvrD-helicase" amino acids 8 to 429 (422 residues), 106 bits, see alignment E=5.9e-34 PF13361: UvrD_C" amino acids 741 to 827 (87 residues), 32.3 bits, see alignment 1.6e-11 PF12705: PDDEXK_1" amino acids 982 to 1123 (142 residues), 22.8 bits, see alignment E=1.6e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2062)

Predicted SEED Role

"FIG003033: Helicase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72AD5 at UniProt or InterPro

Protein Sequence (1152 amino acids)

>DVU2062 ATP-dependent DNA helicase, UvrD/REP family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MIENPQLLQIKASAGSGKTYTLTRRFLELLGTAQQDGSTGPACTLSADGRHCWPEILAAT
FTNRAATEMKERVVRRLKEMALRTGESPEAPWTPALADRWVGTILRQYGALNIRTIDSLL
TLLVRLSALDLRLPPDFEPAFAGPDFFEPLLDDVLETARHDDPALRDMLRRACETLIHHT
DHKGFATGEKLRARLLELLEWHLCNGDLPTTDADAVRARLVTLHERARQGATTLTRVTAD
ENLAVAANFLKFLVKVEESSPFAKVPESAYLHKTNLDECLNKASRGNASAQAESAFSAFM
AALAAFRTRGRLLQRALAIMPLVGIAETLARRLPDYQLREGKVPAQLLPQMARRVLDGEY
GVSEAFCRMGTRLAHILVDEFQDTSKDQWAAIQPLAVECLSRGGSLTWVGDVKQAIYGWR
GGDSALFDAVLRDGELLAIAGDGISGTLPRNWRSRPEIVHFNNDVFALLGDEAHATAVLR
AMLPEGTPPDVFSEAVDELARAFTGAAQETPPRGDDETQEEGFVRLTHVAAFDSEELDAE
VKTALRSLFMGDLALRRRWRDVAVLVRTNGEAGRVATWLMEWDIPVVTENSLRLADHPLI
SQTVALLGFLDYPRDDLAFWEFAAGPELLGDAAGLDAPAMDDWLAEGGRGPLFTRFRDAF
PAVWRRWIAPFYSRAGLMSVYDTVREVYTRFRVFDRYPEDAGFLRRFLEVVHAAEGQGLV
SLSTFLDFWKRTGGDEKVPMPEGMDAVRVMTMHKAKGLEFPVVVIPFHHQADRADDTPVR
MEVEGLDLLVPRCPEMGKPYYEAFAASVREQLHVLYVAWTRPVEELHAFITERKTGKGRS
ALLEGLKVLLGLCGVPETWGTWERGTIPASALADSAAEPAPERRPDQPESTPHTTASPAR
ADSAPADTTPVVQEPAVQTVPPPQPAASACASETAPQATGHDTPSLMVDAAASIPAPAST
PDDDWRPMQWLPRLKIFRNQLEEFTFTERRRGMLVHACLEALHPTGAPREDAARAVRHGI
RAFPLPVPDEDAVAAELTTMLEWYAAQPETAHWLRHGTPEQGILDAQGRLHRTDLFVDDG
NVRVVVEYKTGAPSPDHIEQVHRYLSLLLDADPRPVHGVLVYLDRRTTQRIDPAESGDTS
NTIAHPAEARRP