Protein Info for DVU1650 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved hypothetical protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 PF13432: TPR_16" amino acids 39 to 75 (37 residues), 22.3 bits, see alignment 9.2e-08 amino acids 96 to 152 (57 residues), 19 bits, see alignment E=9.8e-07 PF13431: TPR_17" amino acids 44 to 75 (32 residues), 22.4 bits, see alignment (E = 6.2e-08) PF13174: TPR_6" amino acids 166 to 192 (27 residues), 13.2 bits, see alignment (E = 7e-05)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1650)

Predicted SEED Role

"Heat shock (predicted periplasmic) protein YciM, precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72BI6 at UniProt or InterPro

Protein Sequence (374 amino acids)

>DVU1650 conserved hypothetical protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSIFANLKDRMKAVFQPRSDILASQDAESTPGSRDALFAIEELSRAVRNDPDAVEIYLAL
GNLYRLRGDIDRAVQIRSSLIVRPGLDNRFRARAYLELGRDYRRGGFVDRALQAFDEAQR
LGAERDAIILELAHLHADSGSFDLAAEQFGRVGHKPAQAHYLVRHAEDLCGQGEFAEAVK
TLTRAVKVYPGSIEAWTTRIAMHIRSGEWRKAKSMLREAMQSVSPDRRFLVFDGILAITP
PENAPDSVQQFEQNRCECVLPVISEQEPELLLHYYGALFLLRCGEREQAGNWLAKAMVLR
PDFWAARLELLGISMDRQQLSPVFKGQLEYFVSQARHVKRFVCQNCGLRREQAFYLCPRC
RSWHSATFRLSLQD