Protein Info for DVU1614 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: iron-sulfur cluster-binding protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 176 PF00037: Fer4" amino acids 12 to 28 (17 residues), 21.6 bits, see alignment (E = 3.6e-08) PF12837: Fer4_6" amino acids 12 to 30 (19 residues), 25.2 bits, see alignment (E = 2.9e-09) PF13247: Fer4_11" amino acids 45 to 141 (97 residues), 93 bits, see alignment E=2.9e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_1520)

Predicted SEED Role

"Fe-S-cluster-containing hydrogenase components 1" in subsystem Anaerobic respiratory reductases or Hydrogenases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72BM1 at UniProt or InterPro

Protein Sequence (176 amino acids)

>DVU1614 iron-sulfur cluster-binding protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MADNADRGKTLYIDYSKCIGCETCEAVCAFLYDAPRIVMIRTVDGLMAPLYCKHCEQAHC
MKVCARGALMRDRDGAVVLQPMLCRGCESRNCVLACPYAAFFATDQGVTVRKCDMCASRR
DVGLGPACAEMCPCGAIMYVDREMIDTLETDEARAARDRVMAHVRPPSRKREQGEG