Protein Info for DVU1545 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: hemolysin-type calcium-binding repeat/calx-beta domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2414 PF17963: Big_9" amino acids 660 to 779 (120 residues), 24.8 bits, see alignment 4.9e-09 PF03160: Calx-beta" amino acids 1022 to 1152 (131 residues), 18.4 bits, see alignment 2.7e-07 amino acids 1651 to 1699 (49 residues), 19.9 bits, see alignment (E = 9.7e-08) PF00353: HemolysinCabind" amino acids 2236 to 2270 (35 residues), 35.9 bits, see alignment (E = 8.6e-13) amino acids 2244 to 2279 (36 residues), 35.5 bits, see alignment (E = 1.1e-12)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1545)

Predicted SEED Role

"FIG00602533: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72BT9 at UniProt or InterPro

Protein Sequence (2414 amino acids)

>DVU1545 hemolysin-type calcium-binding repeat/calx-beta domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MPARTVEQHHSVAGAARILLDFPTDAATIEREGDALVFNFPDGARLVLDGFYTVTDGAEL
PDFILPDGTSFPGYDFLAAIDAELLPAAGPGAGGGSGAGGGVGEYDDDAGRLVDSVDRLD
PLTTTYWDRTTEPRIEDEGVIDPAGGALSITINTTLPDGTISGTLGGFEDNQPGQHLGDA
TTTPIQLDVAFTPADNEELVSLTLSGFDVGTSLSIGDPSFGGALIVITAPDQSVTLTPGQ
LAEGIFIRPPEDSSRDMTLTANAVITDPDSGLTDTLSTTVQLVVDAVADRPVLEAETPTP
VATEETPVAIHVSGTFTDLDGSERHFIEVRDIPTDWVLGGTLPQGWIIVDPATHLPIATP
AHALGENTTYTLCIEVTGDTTAHAGGVNSGDSWAVEADLTFATRDWSDTRHGDGTPRPDG
ASGTTITVAAIAEESSATDGELTTGNNRAETTTTITVSRTEDRPVIETSADVPGHAAHLE
VDETPGLQTGDVAAAGLSATVLGIMTGFGLSADDALSATTGQVRFDLHSDGVNDATPVAS
PLAGIAWDASQPLGGATLSTSRGGHPVTVGVVTSADGHSVLQGTYVDDAGTTRVAFIATL
VADDLAGSGSATVSFIQFEALAHPDGSSADEALNLPFRFTVTDDEGDTASSSVLLTLHDD
GPTTAPDSVVFDEARTTGVDGNVLANDSAGSDGYAEGGGVVGFSVTAGGITHSGLVPGDS
IVVMNPGTGVPAGTFTLNADGSYVFTRAPGQDIDGTFTVRVDYTVKDGDGDTATGRLDIA
LKPAPALHLSLTGDTQVYEDAAHGQRVNQAGNAGGSDGWNVSNDGSHDIATYLVQWNNAN
GAPVAGMTTSGAFSFDVTITGVRQVGSSVGASGVFFDGDTTDNDTMAKTGDVTWAVPDGN
GGWRPMHLDLTTDAGKAALKSALNEALDDIYGGKLKVTDVSADGRLTFTVSDGCPLDAPL
PIHVAAIDDRLGDSGERYSLQLGNLRPAEGTPSSFDVAISGNRNVSTSIIDEGNSSESDG
FRIGLESPTSAQESDGAARITLVLYDRDGNVYEGNEPPIQNIGVYLASSDGTAHVDADYF
AATSRWVTPGEWIRVQGQDGHWRWEAKVSVNLADDRNSETDETFTVRLTGVTGHEAMGLA
GRDTAQVTIVDDTAPGHTAHLDGPKLAHFGADTVLREPVAPDTGVSFNPDGTHGTPDAPA
NTVGYTIALTQVAAEDVIVWLKLDTAALGKDFRLGNGIHSADEASALPGYAHRPDGANYY
VVVRGGEASAHFSIDILHDHDTAGDGSGQDAATDAVNITIVDMHGSEAVYDPAHPVSTGD
VIADDMRGPTVEITTLQTSQAAGSTSDVVVGLRGGVPVNEDVTVKLQLVLSDGSTEDHTL
VIRAGETSGTLSLQTPRTGHYHIRVTESTGGETGHDDAFRFVDVHGIGGGGSGHGPVVLA
FTASDAIAEDGGQVEYTVTGKLPDGYTPDGQGLTFSLKTFGGSATKGSDFSSGEVSVTLD
GTLLEHISNVTDGRFTIRLVPDGSGGVKPVVCDGSGAPLDNVPAGSLHVLGSLPTGIDDR
GVEGDESFTTLLTGLGGNVTVAADGSGTSAQTTITDDDRPQVAVTVLDQSGTPVTDATEG
QAEHLTVRVSLHDAIGQPLSLDDGPVTFQLTFTGTGVQGKDYVPFTTTVTIPQGGTFSDI
RVSLPDDFVSDGDRTFTVKATPVANDPYNGYPAGFIGSGTSEVVTIHEHDNGPTMSLTPA
SSTTINENGQAADFRFTLNKAVEEDTTATVRVDFGPGLTEADLEGVRIGNGVAGTDGVTR
ITDASGRVVGWQFDVTVPKGSAGGGAFSIVTRNDYESEGAERFTVSVSGVQGGEVQSVTG
THTVTVNNTNDGPAVYLDTKGDYATAPEGGEAAVHLGMTKTAVADFDVTLKVLDPSVLVP
GSHAVLMIKTPGGEFVAHTTGVDIGQDGRLTLTIPAGTSDAKVVFRTADDGIVGPHAPLE
VGLVTVSGGEATQRGGVSVSSTFAEETYGSITYQTTGNAVPDGKATTTYTLNGVSFADVR
SVRVDGAVVSISQNAAGKTIFTVTSNAGSSISDRITVTFVENANLTSNKANLSVSGVVTV
SGLVEIVDTTAHITAADVSLFALAGDGGDTSASGAIHHDALLAGAVDPSPHAQGIGFNAD
TTSASGIGHAGSGWVVGNDGTLSFSGLEDGDRFTFKTVDLGNTADHDTAHLDVHVVQGVV
FDGSSGEHGTGVVVSGSAQDDTITGTDGDDHLYGNAGDDILRGGNGHDVLDGGTGNDTLH
VHDTTGDGRITGDDFAGLHGGEGVDTILVEGDGTIIDFTAFAAGIVTGVENIDLTAAGKQ
EVYLSANDVLHMGGELIISGTEADAVHLADAGTWTAEGTQTIDGMTYNVFAATVNAAGHE
EQVHLMVQTIVSTS