Protein Info for DVU1490 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: tail tape measure protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 932 PF20155: TMP_3" amino acids 170 to 355 (186 residues), 100.9 bits, see alignment E=7.6e-33 TIGR02675: tape measure domain" amino acids 243 to 316 (74 residues), 77.9 bits, see alignment E=2.9e-26 PF09718: Tape_meas_lam_C" amino acids 725 to 797 (73 residues), 102.7 bits, see alignment 9.1e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1490)

Predicted SEED Role

"tail tape measure protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72BZ4 at UniProt or InterPro

Protein Sequence (932 amino acids)

>DVU1490 tail tape measure protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRIPGVSVVISGDYSQLKQDLNAAKVIVRQEAAGIADAMNSAISPKQAESALAGLTDNLS
KVGRRASAVGTDFSKLGAELGALTKITGLSEVGLRQLQQRVLEQKAINEAERAFSSLGKA
AGMSTMELASFRIKSGDVTGGARMLGSAAMSAVPYVAAIGLAAGAAAKACFDAAMQADRL
NRAYTTVTGSSAGAREQLQFIYEVSNRLGLQFQTTAAAAKSFFAASKGTSMEADARGIFE
AVSQAGAALALSQDDMNGVFIALSQMMSKGKVQAEELRGQLGERLPGAFNLAARAMGVTT
AELDKMLEQGQVLADDLLPKLANVLRSEYAGAASESVAAVNRLSTEWERFKASVMDTDAV
VRGIEAVSSALKNATDAMEANAQRRSIIAEMQALGIKGKELIGEGQYGYSQAQIDEYLWR
KNAGQRQRDGAFADQTSDSVRIERITGAARSAYSAFMKESEAEKIKKINNEAEEAIRKLS
AARDADLANATLYNQQIAAVEAERNEKLKSITRSNASEQNKVSDAMREVHEEVLRLSGDD
VALAQEQFEQRFAKLQRTIGSVTPEMRVWRQEAEKAFSLGMTPQQYHGAITRWGEQARER
SAELSVYRQSIGGNRLDAVEMERLRGLSSIEKWKQSDEWRAASPQQRMEEEAKARELLEL
KSQQRIEEINVQFLGKAASTLKGRTDLQQRVLQQEFATYSKHVQDKELLDAWYEEQRLRL
SRAGSDGIKRGLRDYADEAKNVAKSMEAAVSGAFRSMEDALVNFVTKGKMDFSSFVDSVI
ADLARAQIRQSITGPLASAFGGFDFGKILGFGNHTGGIAGAEATFARAVPSGLYTHAPRY
HGGGIASDEIPAILKRGEGVFTPEQMKRLAPVEASGPRDMEVRIVNESGTPMQITSTHID
FNDTRRREVMTIVIDSLRNNYMGFRDAVATGG