Protein Info for DVU1480 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: conserved domain protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 119 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 50 (22 residues), see Phobius details PF12773: DZR" amino acids 61 to 114 (54 residues), 38.6 bits, see alignment E=2e-13 PF13240: Zn_Ribbon_1" amino acids 96 to 116 (21 residues), 26.5 bits, see alignment 8.8e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1480)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72C04 at UniProt or InterPro

Protein Sequence (119 amino acids)

>DVU1480 conserved domain protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSLEILLLIGIVAGAIGYRVANGKGRDGLVWGMLCFFIPILVLLLLILGPGSGVPPGYRR
CPHCAEPIHKAANVCRHCRGEVTPVQQSTGHATRPCPHCGADMDNDARVCTSCGKSVSF