Protein Info for DVU1322 in Desulfovibrio vulgaris Hildenborough JW710

Name: rplO
Annotation: ribosomal protein L15 (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 TIGR01071: ribosomal protein uL15" amino acids 2 to 143 (142 residues), 161.2 bits, see alignment E=7.1e-52 PF00828: Ribosomal_L27A" amino acids 28 to 143 (116 residues), 126.7 bits, see alignment E=4.4e-41

Best Hits

Swiss-Prot: 100% identical to RL15_DESVH: 50S ribosomal protein L15 (rplO) from Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)

KEGG orthology group: K02876, large subunit ribosomal protein L15 (inferred from 100% identity to dvu:DVU1322)

Predicted SEED Role

"LSU ribosomal protein L15p (L27Ae)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72CG1 at UniProt or InterPro

Protein Sequence (148 amino acids)

>DVU1322 ribosomal protein L15 (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRLHDLYPFPEERKTRKRVGRGSGSGLGCTSGKGNKGQNARAGGGVRPGFEGGQMPLQRR
LPKRGFKNMFAVKYEVINLARLLAAFEGKAEITLDDIYDRGLCSLGSAVKILGEGDVTTA
IKVEAHKFSASAVEKIRNAGGEAKALEG