Protein Info for DVU1309 in Desulfovibrio vulgaris Hildenborough JW710

Name: rpsC
Annotation: ribosomal protein S3 (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 TIGR01009: ribosomal protein uS3" amino acids 1 to 209 (209 residues), 302.1 bits, see alignment E=1.1e-94 PF07650: KH_2" amino acids 38 to 109 (72 residues), 58.9 bits, see alignment E=3.7e-20 PF00189: Ribosomal_S3_C" amino acids 119 to 201 (83 residues), 128 bits, see alignment E=1.7e-41

Best Hits

Swiss-Prot: 100% identical to RS3_DESVH: 30S ribosomal protein S3 (rpsC) from Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)

KEGG orthology group: K02982, small subunit ribosomal protein S3 (inferred from 100% identity to dvu:DVU1309)

Predicted SEED Role

"SSU ribosomal protein S3p (S3e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72CH4 at UniProt or InterPro

Protein Sequence (212 amino acids)

>DVU1309 ribosomal protein S3 (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MGQKVHPFGFRLGYNKNWQSRWYSKKEYPAFVFEDHNIRKFVKKTLYHAGLAKIEIERAG
GKVRLILSTARPGIVIGRKGVEIEKLRADLRKKFKREFAIEVNEIRRPEVESQLVAENIA
LQLERRVAFRRAMKRTVSMARKFGAEGIKVTCSGRLAGAEIARTEWYRDGRVPLQTLRAD
IDFGFAEARTTYGVIGVKVWIFKGELLDNEVA