Protein Info for DVU1242 in Desulfovibrio vulgaris Hildenborough JW710

Name: vacJhomolog
Annotation: vacJ lipoprotein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 signal peptide" amino acids 1 to 49 (49 residues), see Phobius details PF04333: MlaA" amino acids 75 to 269 (195 residues), 226.5 bits, see alignment E=1.3e-71

Best Hits

KEGG orthology group: K04754, lipoprotein (inferred from 100% identity to dvl:Dvul_1820)

Predicted SEED Role

"VacJ family lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72CP1 at UniProt or InterPro

Protein Sequence (273 amino acids)

>DVU1242 vacJ lipoprotein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MMFRSRQPVEPALCEAERCSRCAFTGVRLLAAVILCACLVGVSPGAHAAGDPAPYAAQTS
DTLDDYDVPDAHLVADPLEGWNRMWFGFNDFVLLRIGKPVYKGYEAVTPEELRSGVRNFF
HNILFPLRFVNNLLQGRFNAAGVEMGRFIVNTTVGMGGLIDVAKKDRPVVPVEDEDMGQT
LGVWGFGEGFYLVWPFIGPSTLRDTAGFAGDYFLDPTWFALTLEESIAANGYKQLNGLGP
AIDGYEGLKSGSVEPYTAVRNAYIQLRRDKIRR