Protein Info for DVU1239 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: membrane protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 53 (19 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 105 to 128 (24 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 176 to 198 (23 residues), see Phobius details PF03956: Lys_export" amino acids 8 to 197 (190 residues), 210.1 bits, see alignment E=1.1e-66

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1239)

Predicted SEED Role

"Putative surface protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72CP4 at UniProt or InterPro

Protein Sequence (200 amino acids)

>DVU1239 membrane protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MKGSCIILCFFLAGVLVGRLDIVPDAIARGDLASWALYLLLFVVGMGIGFDTRSWRILRE
LHIKVALVPLAVMAGTFGGAAMAWLALGDMPLRDVLGVGAGFGYYSLSSIMITRMGDAAL
GSVALLANITRELTTLLATPLLVRAFGGLAPVAAGGATAMDTCLPVIARYAGERCGIVAV
FSGMVLTVAVPLLISVIFSW