Protein Info for DVU1081 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: iron-sulfur cluster-binding protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 transmembrane" amino acids 99 to 116 (18 residues), see Phobius details amino acids 124 to 136 (13 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 210 to 228 (19 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details amino acids 279 to 302 (24 residues), see Phobius details amino acids 326 to 353 (28 residues), see Phobius details amino acids 373 to 392 (20 residues), see Phobius details amino acids 398 to 417 (20 residues), see Phobius details amino acids 518 to 537 (20 residues), see Phobius details PF12801: Fer4_5" amino acids 327 to 363 (37 residues), 25.1 bits, see alignment 2e-09 amino acids 406 to 445 (40 residues), 12.7 bits, see alignment 1.6e-05 PF00037: Fer4" amino acids 449 to 471 (23 residues), 26.7 bits, see alignment (E = 5.4e-10)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1081)

Predicted SEED Role

"Polyferredoxin NapH (periplasmic nitrate reductase)" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72D49 at UniProt or InterPro

Protein Sequence (539 amino acids)

>DVU1081 iron-sulfur cluster-binding protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MTPHTKPCGGCRDTAGEGTARVPGQSATEGDDSALKHEQGKSAPAVSEDTAPDSMMAGDV
AVSSGQMAKRRVAQGDGEEASPSITPPQGETPAGLTRHLLPWLPVVAALLLAANALRRDA
WGLLGLWCVVACLACTRQAWARIVVALALCAGVVVWADTTQQFVSFRMMAGLPWGRLVAI
MATVGGITALSSLVLLGRAGEARYTSGRDMAGAQAWAALLTFAGLMWIRHATGPLTPLLA
DRLWPGSGMVQAALMAVYAAWAVGRLADPKLSRVWRPRLWALFSFVFSMQLALGLIGYDI
FLMTGRLHLPVPALILAGPLYRGTGWFMLGLFTFSTLLLGAAWCSHLCYIGAWDDMASRR
KRRCGTLPNHAGRVRLGIALLVFGGAVALRLLGVGPVAAFTAAACFGLAGVGVMLAVSTR
RGVLVHCTTYCPMGLLADVMGRLTPWRLQVDTGRCTRCGACSAVCRYDALTPADIEGGAA
GFTCSRCRDCLAVCRHGAMRLTFAGRGIVGRLAGGVRAETIFVVTAVTLHAIFLAVARM