Protein Info for DVU1063 in Desulfovibrio vulgaris Hildenborough JW710

Name: flrC
Annotation: transcriptional regulatory protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF00158: Sigma54_activat" amino acids 144 to 310 (167 residues), 234.7 bits, see alignment E=9.7e-74 PF14532: Sigma54_activ_2" amino acids 159 to 315 (157 residues), 63.1 bits, see alignment E=6.7e-21 PF07728: AAA_5" amino acids 168 to 286 (119 residues), 25.7 bits, see alignment E=2e-09 PF02954: HTH_8" amino acids 429 to 469 (41 residues), 51.8 bits, see alignment 1e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_1931)

Predicted SEED Role

"transcriptional regulatory protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72D66 at UniProt or InterPro

Protein Sequence (477 amino acids)

>DVU1063 transcriptional regulatory protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MSARRILFLAPAHAVTRIYPQLRDAGYEVGLAENLKGASAFIRKSGPDVIFSRPSLPGYR
VDDLLAVGSDDPAFPPVIVFTDRGTPEEAEQLLALGARDYWLEPLTFEKVTAALPRPRRS
APAAPPQSTLGGRKPDPFPPGARIVGSHPALRRVLGLARQVAPSRATVLISGESGTGKEM
FARCLHGWSDRAANPFVAVNCAALPEHLLESELFGHERGAFTGAIARKLGRFELANGGTI
LLDEISEMDLGLQAKLLRVLQEGEIDRVGGMETVKVDVRVLATTNRDLEEWVKQGKFRQD
LFFRLNVIPLRLPALRERGDDVLELARFFIDLYVRDYTLPVPSLSDEAIAWLRSYEWPGN
VRELQNLMERAVLLANGGAITPGHFLLDPDAWPLFEESSDAGDTAGVQGAPDKGAQVEAV
NISGGVIPLHEMERIMILKGLEATSGNRTQAAELLGISVRTLRNKLNEYRSMGIDVD