Protein Info for DVU1060 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: glycosyl transferase, group 1 family protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 PF13439: Glyco_transf_4" amino acids 13 to 158 (146 residues), 51.9 bits, see alignment E=2.4e-17 PF20706: GT4-conflict" amino acids 184 to 335 (152 residues), 36.2 bits, see alignment E=9e-13 PF00534: Glycos_transf_1" amino acids 190 to 334 (145 residues), 90.7 bits, see alignment E=2.1e-29 PF13692: Glyco_trans_1_4" amino acids 192 to 324 (133 residues), 95.8 bits, see alignment E=7.4e-31 PF13524: Glyco_trans_1_2" amino acids 266 to 352 (87 residues), 26.2 bits, see alignment E=1.9e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU1060)

Predicted SEED Role

"glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72D69 at UniProt or InterPro

Protein Sequence (367 amino acids)

>DVU1060 glycosyl transferase, group 1 family protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MRIIILSSSTNRSGGTRQAFYQARELATRGHHVSLCLPEDSQMHGMGYDDLIVTLPADRK
RWKASIEALFAADGPTVVHAFHNRAVKFVAWHGMFWRHRGVVCCAHRGVMYRPGNPLPYI
SPGMDAFIANSQACARVLRLFTPAGKLFVVYNGVDDARVTPRTPADTAREQVGLPPRGAE
AAWSSSSPAPLVFGFVGQNSPVKGADILIDAFARADVGEARLLMVGVSHDMWRPRCEALG
IADRVHLVPHTESVSDMLQLMDAFVLPSRTESLPNTMLEAIRMGLPVIGSAVGGVPELVR
GNGLLFPAGDIDALAAALGRMASDHATREAWAAASHAEGERYTIHARVDALEDIYAQLLR
RRGLHTA