Protein Info for DVU0935 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: methyl-accepting chemotaxis protein (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 834 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 35 to 53 (19 residues), see Phobius details amino acids 347 to 371 (25 residues), see Phobius details PF14827: dCache_3" amino acids 101 to 335 (235 residues), 65.2 bits, see alignment E=2.2e-21 TIGR00229: PAS domain S-box protein" amino acids 426 to 548 (123 residues), 32.6 bits, see alignment E=3.8e-12 PF13188: PAS_8" amino acids 428 to 472 (45 residues), 24.8 bits, see alignment 4.7e-09 PF00989: PAS" amino acids 428 to 469 (42 residues), 24.9 bits, see alignment 5.2e-09 PF08448: PAS_4" amino acids 433 to 543 (111 residues), 41.2 bits, see alignment E=5.1e-14 PF13426: PAS_9" amino acids 436 to 540 (105 residues), 26.2 bits, see alignment E=2.5e-09 PF00015: MCPsignal" amino acids 621 to 803 (183 residues), 155.4 bits, see alignment E=4e-49

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU0935)

Predicted SEED Role

"methyl-accepting chemotaxis sensory transducer"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72DJ4 at UniProt or InterPro

Protein Sequence (834 amino acids)

>DVU0935 methyl-accepting chemotaxis protein (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MIAFRDLSGRMVMWACGRATLNLAGVVMGIRQKLFLPFALAVFILGAGAYWVLSGELHAL
KSVFLERIAESKSSELAQNVELLGTQALEQASLFSALPVVQEAYAIAMSGNIADERDAKG
QEARELLRRELKGHLQSFEAINGRKFKLHFHLPNGRSLVRLWSAKQVKRDGQGVDVSDDI
STFRQTVVEVNRSGQPRKGIEVGRGGFDVRGVSPVRDASGKQIGSVEVLVEFAPLLEVAS
RGQGEDLMLFMNTSLQDIANGMSDRSKHPLVGSDFMLATGNPKSPAFAKVSPQLLTAGRT
GVHVEDEGGTALMSFPVKDYKGEQVGVFVFVMDNSAAAAIFDTFAKVMLVALLALLVVPG
IIFSTLLTRVVVRPVGNVVRLIRDITEDRANLNDRLADTDSGEVGELCRWFNRLMGKIED
ILCSVEGYKNIVNAIPDPVFAVDDDYNILLANNAVARLAGKTDGEQVRGMRCSSIFNTSV
CGTDRCPICQARTKQGRYEAEIIELNIHGKSRWIRPYGDILHDCHGQRAGYLEVASDVTE
LYRKETELKGHMSRMQAVNTEVVEVASQVAEASASIEEQTRQVLSSADSQRHLIAESVGA
IGQMNDTIMEVARSAALASQQAGSGQTKAQEGSRIVSDAVQAIGTVSQLSGVLRTNLTEL
GGQAESIGQIMNVISDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMNAT
QEVRRSIETIQSGAARNISSMEEVASAVGQATVLAERSGTALREIVALVNDTSSQVTAIA
TAAEEQSASSEEIKRSVEQVSALSEETAQRMEDAARAVNDLTGLAQRLGHLSRS