Protein Info for DVU0751 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 103 to 125 (23 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 184 to 192 (9 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 275 to 295 (21 residues), see Phobius details amino acids 332 to 352 (21 residues), see Phobius details amino acids 390 to 414 (25 residues), see Phobius details amino acids 426 to 449 (24 residues), see Phobius details amino acids 458 to 476 (19 residues), see Phobius details amino acids 518 to 541 (24 residues), see Phobius details amino acids 561 to 581 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 57 to 160 (104 residues), 69.9 bits, see alignment E=3.2e-23 amino acids 388 to 481 (94 residues), 80 bits, see alignment E=2.3e-26 PF00528: BPD_transp_1" amino acids 76 to 266 (191 residues), 76.5 bits, see alignment E=1.1e-25 amino acids 406 to 588 (183 residues), 62.7 bits, see alignment E=2e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_2219)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72E28 at UniProt or InterPro

Protein Sequence (596 amino acids)

>DVU0751 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MIRYWLDKTWVQYLVLCSITLLAVYYWGWVFDFGYQFQWDILFTRNTTYGTHLGLEILKG
LGVTVRISLISSALALGLGTVLGIARLSLFAPLRLTATAVVEFFRNTPLLVQLFFWYFAF
PAILPENIRELLFTGNFEFWCATIGLSVYTSAFMAEVIRAGLQSIPKGLLEAAYSSGLNY
VQVLRTIILPMAFRAIIPPLGSEFLNNMKNSSLAMVVGVAELTWQSQQVESLTFKGFEAT
SAATVLYLSLSLLISFILNGVNGKMRLDTAPKRSLSVMFVDAVLLPVSLIRRVFVRPIGR
ALRRRRRAATSATYSPAMATMRVAMQMAGKGASLLCKGAFILALGGLLFVTARGLYNFNW
GVIADNLRTLLIWHFPNGQSDELFMGLGGLAYSLLMAVIAISVSFFIGLVVGIGRTSDNR
ICRIPCLLYIELIRGNPLIIVIFWIYFFIPVLFNTFFNVFWSATIALTLFTGAYLAEIVR
AGIQNIPAGQVEAAYSTGLTFVQTMRRIILPQALKQMIPAIVGQFIAIFKDTSLAFVLGV
LELTFVAQGINNRLMVYPMEIYGTVAFLYFICCWSMSVYAARLERRLSPEKINLRM