Protein Info for DVU0705 in Desulfovibrio vulgaris Hildenborough JW710

Name: dctM
Annotation: TRAP dicarboxylate transporter, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 48 to 67 (20 residues), see Phobius details amino acids 79 to 105 (27 residues), see Phobius details amino acids 111 to 129 (19 residues), see Phobius details amino acids 136 to 160 (25 residues), see Phobius details amino acids 167 to 191 (25 residues), see Phobius details amino acids 211 to 234 (24 residues), see Phobius details amino acids 240 to 259 (20 residues), see Phobius details amino acids 272 to 295 (24 residues), see Phobius details amino acids 316 to 343 (28 residues), see Phobius details amino acids 352 to 375 (24 residues), see Phobius details amino acids 395 to 419 (25 residues), see Phobius details PF06808: DctM" amino acids 6 to 416 (411 residues), 321.3 bits, see alignment E=4.8e-100 TIGR00786: TRAP transporter, DctM subunit" amino acids 16 to 421 (406 residues), 343.7 bits, see alignment E=6.5e-107

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvl:Dvul_2259)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72E74 at UniProt or InterPro

Protein Sequence (427 amino acids)

>DVU0705 TRAP dicarboxylate transporter, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MTILLFGLFAVMMFIGVPLATAMGLSATVAIAAAKLGLLSVPISVYTGVAKYPLLAIPMF
IFAGMVFERSGVALRLVNFTVALVGPLRGGLAIASIMVCMVLGGISGSGPADAAAVAMVM
IPGMAAAGYPKAFSAGLIAAAGSTAILIPPSIAFILYSVLVPQASVPALFAAGLIPGFLA
GIALIIPAWALSVRHGFGLVGDDASCGSILIAFKEAIWGLLAPVIILGGIRSGYFTPTEA
AVAAVFYGLFVGFFVYRTLTLRGIYELLVESAEVSAVVMMIIALSSVFAWAGSTLGAFEA
MGNALIGISTSETMTLLAVVLVLIIAGMFLDGVSILFIFIPILLPVMTHFGWNAVWFGVI
MTMCLAIGQFTPPLALNLMVTTRIADIGIEETVPWVLWFVLAMTIAMLLVVFVPQLATLV
PGHLGYL