Protein Info for SOA0167 in Shewanella oneidensis MR-1

Annotation: ISSod9, transposase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 988 transmembrane" amino acids 912 to 930 (19 residues), see Phobius details PF13700: DUF4158" amino acids 6 to 169 (164 residues), 179.2 bits, see alignment E=6.5e-57 PF01526: DDE_Tnp_Tn3" amino acids 580 to 966 (387 residues), 527.9 bits, see alignment E=1.4e-162

Best Hits

Swiss-Prot: 82% identical to TNP2_ECOLX: Transposase for transposon Tn21 (tnpA) from Escherichia coli

KEGG orthology group: None (inferred from 88% identity to mfa:Mfla_1495)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (988 amino acids)

>SOA0167 ISSod9, transposase (NCBI ptt file) (Shewanella oneidensis MR-1)
MPRRSILSAAERDSLLVLPDTQDELIRHYTFSEPDLSLIRQRRGDANRLGIAVQLCLLRF
PGQGLLPDATVPMPLLQWIGQQLQLDPVCWPQYAEREETRREHLLELRVYLGMEPFSQVH
HRQAVHTTTELALQTDKGIVLANSVVETLRHKHIILPTLDVVERVCAEALTRANRRIYDT
LTEPLSGSHRHRLDDLLKLRDNNKTTTLAWLRLSPVKPNSRHMLEHIERLKVWQALDLPI
GVDRLIHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALAIEGMATVTDEIIDLHDRI
MGKLFNDAKKRHQKQFQASGKAINAKVRLFGRIGQVLIDAKQAGDDPFAAIEGVISWEAF
AKSVTEAQSLAQPEEFDFLYRLGESYATLRRYAPTFLTALKLRAAPAAKGVLEAIEVLRS
MNNDNARKVPADAPIDFIKPRWQKLVITDTGIDRRYYELCALSEMRNALRSGDIWVQGSR
QFKDFEDYLVPPAKFVSLKQTNQLPLAVATDCEQYLNERLTQLETQLATVNSMAQANELP
DAIITASGLKITPLDAVVPDTAQRLIDQAARILPHVKITELLLEVDEWTGFTRHFAHLKS
GVLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHIRDETYGAALSELVN
AQYRHPFAEHWGDGSTSSSDGQNFRTGNKAESTGHINPKYGSSPGRTFYTHISDQYAPFH
TKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLG
ETKLYIPKRDVTYEGLKSMIGGTLNIKLIRTHWDEILRLATSIKQGTVTASLMLRKLGSY
PRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEI
RDRSFEQQRYRASGLNLVTAAIVLWNTVYLERVAHGLRAKGHAVDEELLQYLSPLGWEHI
NLTGDYLWRSSAKIGSGKFRPLRPLSPA